Award Abstract # 1829695
Mineral-Promoted RNA Polymerization: Investigating Structural Properties of Catalytic Minerals

NSF Org: EAR
Division Of Earth Sciences
Recipient: THE UNIVERSITY OF AKRON
Initial Amendment Date: August 13, 2019
Latest Amendment Date: July 28, 2021
Award Number: 1829695
Award Instrument: Continuing Grant
Program Manager: Alberto Perez-Huerta
aperezhu@nsf.gov
 (703)292-0000
EAR
 Division Of Earth Sciences
GEO
 Directorate For Geosciences
Start Date: September 1, 2019
End Date: August 31, 2024 (Estimated)
Total Intended Award Amount: $516,342.00
Total Awarded Amount to Date: $516,342.00
Funds Obligated to Date: FY 2019 = $168,018.00
FY 2020 = $171,546.00

FY 2021 = $176,778.00
History of Investigator:
  • Nita Sahai (Principal Investigator)
    sahai@uakron.edu
Recipient Sponsored Research Office: University of Akron
302 BUCHTEL COMMON
AKRON
OH  US  44325-0001
(330)972-2760
Sponsor Congressional District: 13
Primary Place of Performance: University of Akron
OH  US  44325-0001
Primary Place of Performance
Congressional District:
13
Unique Entity Identifier (UEI): DFNLDECWM8J8
Parent UEI: DFNLDECWM8J8
NSF Program(s): Geobiology & Low-Temp Geochem
Primary Program Source: 01001920DB NSF RESEARCH & RELATED ACTIVIT
01002021DB NSF RESEARCH & RELATED ACTIVIT

01002122DB NSF RESEARCH & RELATED ACTIVIT
Program Reference Code(s):
Program Element Code(s): 729500
Award Agency Code: 4900
Fund Agency Code: 4900
Assistance Listing Number(s): 47.050

ABSTRACT

The goal of the proposed work is to identify minerals which could have played a role in the origin of life (OoL) on early Earth by promoting the formation of longer molecules (polymers) of ribonucleic acid (RNA) from simple starting precursor molecules (monomers). Before life and enzymes, it is proposed that minerals may have acted as catalysts to play the role of enzymes in promoting polymerization. RNA is one of the most important molecules in biology because of its ability to play many roles. In the OoL, the formation of polymers is important because oligomers have the ability to take on different structures and functionalities. Thus, polymerization of monomers is a key bridging step in the progress from simple organic precursors towards the earliest life-like cells. The proposed work would contribute to NSF's goal of promoting the progress of fundamental science in one of the most profound questions asked by humankind, which is, how did life begin? The proposed work also includes numerous outreach activities, including the development of a weekly program on National Public Radio as well as a public science lecture series, which would bring science to the general public, and outreach activities to encourage women and diversity. The grant funds would support a post-doctoral researcher. Thus, the proposed work also supports NSF's goal of supporting education and diversity, and training the future scientific workforce.

Minerals, because of their reactivity and ubiquity, likely contributed to the origin of life in the transformation from prebiotic geochemistry to biochemistry. RNA is an information- carrier and some RNAs can also act as enzymes, so RNA is believed to have been a precursor to DNA and enzymes in the origins of life. One of the major challenges in the field is the non-enzymatic (prebiotic) synthesis of RNA oligomers, and minerals have long been proposed as prebiotic catalysts. The role of montmorillonite in promoting polymerization of activated ribonucleotides in the presence of magnesium or high concentrations of alkali cations has been known for thirty years, and several studies have investigated RNA monomer adsorption on minerals, but other catalytic minerals are not known. Thus, there is a lack of knowledge about any potential relationships between mineral structure and polymerization catalytic efficiency. We propose to address this gap in our knowledge. We propose three hypotheses for the relationship between the mineral structure, its adsorption capacity and its catalytic efficiency: (1) adsorbed ribonucleotide conformation is more important than adsorption capacity of the mineral for catalysis; (2) the divalent or alkali cations should form outer-sphere ternary complexes between the nucleotide and any negatively charged mineral surface, so that they can be easily displaced and the nucleotide phosphate is still available for phosphorylation; and (3) the mineral should provide a nanoconfined environment where the condensation reaction can occur despite bulk aqueous environment. Specific minerals, such as birnessite, hydrotalcite and zeolites are predicted to have catalytic structures. The broad goals of the present study are to shed light on any potential relationships between mineral structure, surface chemistry, adsorption capacity, adsorbed conformation and polymerization efficiency, thus, discovering new catalytic minerals. The specific aims are (1) to determine the adsorption characteristics of adenosine monophosphate nucleotides in the absence and presence of dissolved cations;(2) to determine the nucleotide polymerization-promoting ability of various minerals; (3) to determine the detailed molecular-level conformation of adsorbed mononucleotides on minerals that promote polymerization; and (4) to synthesize these results to develop a model for explaining the catalytic ability of montmorillonite and to test the predicted catalytic activity of specific minerals. We will determine adsorption using UV-Vis spectrophotometry, and polymerization of mononucleotides on the known catalytic mineral and on the newly predicted minerals by High Performance Liquid Chromatography (HPLC) and MALDI-TOF Mass Spectrometry. Conformation of adsorbed monomer will be determined by Magic Angle Spinning NMR spectroscopy and by Fourier Transform Infra-Red Spectroscopy. The proposed work provides structure-based predictions for catalytic activity, thus helping to identify new catalytic minerals beyond montmorillonite. Knowledge of a wider variety of catalytic minerals under specific environmental conditions will help predict the plausibility of prebiotic polymerization reactions of biomolecules for life's emergence on other solid worlds, e.g., Mars.

This award reflects NSF's statutory mission and has been deemed worthy of support through evaluation using the Foundation's intellectual merit and broader impacts review criteria.

PUBLICATIONS PRODUCED AS A RESULT OF THIS RESEARCH

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(Showing: 1 - 10 of 14)
Raee, Ehsan and Sun, Xinyu and Yang, Yuqing and Xu, Xiaohan and Zhou, Yifan and Sahai, Nita and Liu, Tianbo "Electrostatic interaction regulated self-assembly of simple inorganic macroions into blackberry structures and their possible role as compartment systems in the origin of life" Giant , v.12 , 2022 https://doi.org/10.1016/j.giant.2022.100125 Citation Details
Raee, Ehsan and Liu, Bingqing and Yang, Yuqing and Namani, Trishool and Cui, Yunpeng and Sahai, Nita and Li, Xiaopeng and Liu, Tianbo "Side Group of Hydrophobic Amino Acids Controls Chiral Discrimination among Chiral Counterions and Metal?Organic Cages" Nano Letters , v.22 , 2022 https://doi.org/10.1021/acs.nanolett.2c00908 Citation Details
Raee, Ehsan and Li, Hui and Sun, Xinyu and Ustriyana, Putu and Luo, Jiancheng and Chen, Jiahui and Sahai, Nita and Liu, Tianbo "Strong Enantiomeric Preference on the Macroion?Counterion Interaction Induced by Weakly Associated Chiral Counterions" The Journal of Physical Chemistry B , v.124 , 2020 https://doi.org/10.1021/acs.jpcb.0c07424 Citation Details
Zhou, Xianfeng and Dalai, Punam and Sahai, Nita "Semipermeable Mixed Phospholipid-Fatty Acid Membranes Exhibit K+/Na+ Selectivity in the Absence of Proteins" Life , v.10 , 2020 https://doi.org/10.3390/life10040039 Citation Details
Dalai, Punam and Sahai, Nita "A Model Protometabolic Pathway across Protocell Membranes Assisted by Photocatalytic Minerals" The Journal of Physical Chemistry C , v.124 , 2020 https://doi.org/10.1021/acs.jpcc.9b10127 Citation Details
Sahai, Nita and Schoonen, Martin A. "Accuracy of Thermodynamic Databases for Hydroxyapatite Dissolution Constant" Astrobiology , v.20 , 2020 https://doi.org/10.1089/ast.2019.2158 Citation Details
Hochella, Michael F. and Mogk, David W. and Ranville, James and Allen, Irving C. and Luther, George W. and Marr, Linsey C. and McGrail, B. Peter and Murayama, Mitsu and Qafoku, Nikolla P. and Rosso, Kevin M. and Sahai, Nita and Schroeder, Paul A. and Vike "Natural, incidental, and engineered nanomaterials and their impacts on the Earth system" Science , v.363 , 2019 https://doi.org/10.1126/science.aau8299 Citation Details
Dalai, Punam and Ustriyana, Putu and Sahai, Nita "Aqueous magnesium as an environmental selection pressure in the evolution of phospholipid membranes on early earth" Geochimica et Cosmochimica Acta , v.223 , 2018 https://doi.org/10.1016/j.gca.2017.11.034 Citation Details
Sahai, Nita and Adebayo, Segun and Schoonen, Martin A. "Freshwater and Evaporite Brine Compositions on Hadean Earth: Priming the Origins of Life" Astrobiology , v.22 , 2022 https://doi.org/10.1089/ast.2020.2396 Citation Details
Luo, Jiancheng and Ye, Songtao and Ustriyana, Putu and Wei, Benqian and Chen, Jiahui and Raee, Ehsan and Hu, Yinghe and Yang, Yuqing and Zhou, Yifan and Wesdemiotis, Chrys and Sahai, Nita and Liu, Tianbo "Unraveling Chiral Selection in the Self-assembly of Chiral Fullerene Macroions: Effects of Small Chiral Components Including Counterions, Co-ions, or Neutral Molecules" Langmuir , v.36 , 2020 https://doi.org/10.1021/acs.langmuir.0c00611 Citation Details
Namani, Trishool and Ruf, Reghan J. and Arsano, Iskinder and Hu, Ruibo and Wesdemiotis, Chrys and Sahai, Nita "Novel Chimeric Amino Acid-Fatty Alcohol Ester Amphiphiles Self-Assemble into Stable Primitive Membranes in Diverse Geological Settings" Astrobiology , v.23 , 2023 https://doi.org/10.1089/ast.2022.0056 Citation Details
(Showing: 1 - 10 of 14)

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