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ResearchGate
https://www.researchgate.net/publication/345690894...
Distributed stream processing for genomics pipelines
WEBOct 12, 2017 · In this work we propose the adoption of the stream computing architecture to make the genomics pipeline more scalable, and fault-tolerant.
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PeerJ
https://peerj.com/preprints/3338
Distributed stream processing for genomics pipelines
WEBOct 12, 2017 · In this work we propose the adoption of the stream computing architecture to make the genomics pipeline more scalable, and fault-tolerant. We implemented the …
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Genomics Pipelines
Distributed Stream Processing
Publish Year:2017
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Semantic Scholar
https://www.semanticscholar.org/paper/Distributed...
Distributed stream processing for genomics pipelines - Semantic …
WEBOct 12, 2017 · This work decompose the first processing phases for Illumina sequencing data into two distinct and specialized modules (preprocessing and alignment) and …
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Genomics Pipelines
Distributed Stream Processing
Europe PMC
https://europepmc.org/article/PPR/PPR36949
Distributed stream processing for genomics pipelines
WEBOct 12, 2017 · Distributed stream processing for genomics pipelines ... This website requires cookies, and the limited processing of your personal data in order to function. …
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Genomics Pipelines
Distributed Stream Processing
National Center for Biotechnology Information
https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6559338
GenPipes: an open-source framework for distributed and scalable …
WEBJun 11, 2019 · GenPipes already implements 12 validated and scalable pipelines for various genomics applications, including RNA sequencing, chromatin …
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Genomics Pipelines
Publish Year:2019
10.1093/gigascience/giz037
bioRxiv
https://www.biorxiv.org/content/10.1101/182030v1.full.pdf
[PDF]
Kafka interfaces for composable streaming genomics …
WEBWe decompose the first steps of the genomic processing in two distinct and specialized modules (preprocessing and alignment) and we loosely compose them via …
People also ask
How are computational pipelines developed?
Historically, computational pipelines were developed using custom scripts or Make files 10, 11 (Fig. 1b ). These traditional pipelines greatly simplify the recurrent analysis of data.
Reproducible, scalable, and shareable analysis pipelines with
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How scalable is a bioinformatics pipeline?
Scalability of pipelines encompasses two aspects: efficient resource management and the ability to handle any size and quantity of input data 35, 36. Resource management is particularly important for bioinformatics workflows that consist of multiple steps that each have different CPU and memory requirements.
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What are pipeline reports & Dois?
Pipeline reports and DOIs ensure that a workflow can be run with identical parameters and software versions. However, executing the same pipeline code on another machine or operating system can still be impossible, for example, owing to missing dependencies or incompatible software versions.
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PubMed
https://pubmed.ncbi.nlm.nih.gov/31185495
GenPipes: an open-source framework for distributed and scalable …
WEBJun 1, 2019 · GenPipes already implements 12 validated and scalable pipelines for various genomics applications, including RNA sequencing, chromatin immunoprecipitation …
Tags:
Genomics Pipelines
Publish Year:2019
Nature
https://www.nature.com/articles/s41592-021-01254-9
Reproducible, scalable, and shareable analysis pipelines with ...
WEBSep 23, 2021 · We outline community-curated pipeline initiatives that enable novice and experienced users to perform complex, best-practice analyses without having to …
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Bioinformatics Workflow Managers
Edge Pipeline Paper Bioinformatics
ResearchGate
https://www.researchgate.net/publication/348081929...
Group Mutual Exclusion to Scale Distributed Stream Processing …
WEBDec 1, 2020 · This article addresses the profitability problem associated with auto-parallelization of general-purpose distributed data stream processing applications.
bioRxiv
https://www.biorxiv.org/content/biorxiv/early/2018/11/01/459552.full.pdf
[PDF]
GenPipes: an open-source framework for distributed and …
WEBNov 1, 2018 · GenPipes already implements 12 validated and scalable pipelines for various genomics applications, including RNA-Seq, ChIP-Seq, DNA-Seq, Methyl-Seq, Hi-C, …
Tags:
Genomics Pipelines
Publish Year:2018
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